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Home » Main Dishes

Zucchini Egg Muffins

Published: Sep 2, 2022 · Modified: Jul 8, 2025 by Heather · As an Amazon Associate I earn from qualifying purchases. · 841 words. · About 5 minutes to read this article.

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Zucchini egg muffins recipe.
Zucchini egg muffins recipe.
Zucchini egg muffins recipe.

Zucchini egg muffins are small muffin-shaped frittatas filled with cheese, onions, and shredded zucchini. Perfect for breakfast on the go, these egg muffins can be made ahead for the entire week.

Four zucchini egg muffins on a white plate.

Recipe summary

Flavor: Light, fresh summer flavor. Like a mini frittata filled with shredded zucchini, cheese, onions, and basil.

Yield: 10 muffins

Quick and easy: Great for breakfast meal prep, ready in 30 minutes, and easy to customize!

Similar to: Zucchini Mushroom Quiche, Scrambled Eggs With Veggies

Jump to:
  • Recipe summary
  • Ingredients and substitutions
  • How to make egg muffins
  • Tips and tricks
  • Frequently asked questions
  • 📖 Recipe
  • Comments

Ingredients and substitutions

Ingredients on a counter top.
  • Eggs - You'll need six large eggs to make 10 muffins with this recipe.
  • Zucchini - Grated zucchini, whether from a box grater or food processor, works best for this recipe. I used a standard grate but finely grated zucchini also works. Don't forget to squeeze out as much liquid as possible from your zucchini to prevent your muffins from turning out too wet.
  • Cheese - Use your favorite cheese here - sharp cheddar cheese, feta cheese, pepper jack cheese, or monterey jack cheese are great choices.
  • Onions - Two green onions, diced, are easy to find and inexpensive to add to your egg muffins. Diced sweet onion or red onion would also work here.
  • Seasoning - Salt, pepper, and dried basil add enough flavor without overwhelming the other ingredients. Basil can be substituted with dried thyme, oregano, or your favorite seasoning blend for a unique flavor (try taco seasoning or cajun seasoning for a spicier flavor).

How to make egg muffins

Making zucchini egg muffins.
  1. After shredding your zucchini, wrap in paper towels and squeeze out as much liquid as possible.
  2. Whisk eggs in a bowl, then add zucchini, cheese, onions, and seasoning. Stir to combine.
  3. Divide between 10 lined muffin tins, filling about ⅔ full.
  4. Bake until muffins are set in the center.

Tips and tricks

Variations - Add chopped fresh herbs, leafy greens like kale or spinach, small chopped veggies like broccoli or bell pepper, and substitute the cheese with your favorite variety.

How to prevent sticking - I tested this recipe multiple times in a greased non-stick muffin pan (shown in the photos) without liners. Sticking was inconsistent and a major pain to clean out. Instead, I recommend using silicone liners, a silicone baking pan, or paper liners sprayed with cooking spray.

Zucchini egg muffins in silicone muffin liners in a pan.

Frequently asked questions

Do I need to line my muffin pan?

Yes. While testing this recipe, I had inconsistent results when using a greased, non-lined, non-stick muffin pan. Cooked eggs were also a huge pain to clean out when they did stick. Instead, I recommend using reusable silicone liners, paper liners, or a silicone muffin pan. Here are a few options:
12 Cups Silicone Muffin Pan - Nonstick
Amazon Basics Reusable Silicone Baking Cups, Muffin Liners - Pack of 12
PaperChef Standard Paper Cupcake Liners

How long do egg muffins last?

Zucchini egg muffins will keep for 3 to 4 days in a tightly sealed container in the refrigerator and reheat well in the microwave.

How do you reheat egg muffins?

Cover with a paper towel and microwave in 20 seconds increments until warmed through (they reheat quickly). They can also be reheated in the toaster oven at 350 degrees Fahrenheit for 8-10 minutes.

Can they be frozen?

Yes, egg muffins freeze well for up to 3 months. Allow your muffins to cool completely to room temperature before freezing - this helps prevent your muffins from getting watery when thawing later on. Transfer to the refrigerator to allow to thaw overnight.

📖 Recipe

Four zucchini egg muffins on a white plate.
Print Recipe
5 from 3 votes

Zucchini Egg Muffins

Zucchini egg muffins are small muffin-shaped frittatas filled with cheese, onions, and shredded zucchini. Perfect for breakfast on the go, these egg muffins can be made ahead for the entire week.
Prep Time10 minutes mins
Cook Time16 minutes mins
Total Time26 minutes mins
Servings: 10 muffins
Calories: 87kcal

Ingredients

  • 6 large eggs
  • 1 cup grated zucchini, liquid squeezed out
  • 1 cup grated sharp cheddar cheese
  • 2 green onions, diced
  • ½ teaspoon salt
  • ¼ teaspoon dried basil
  • ¼ teaspoon pepper

Instructions

  • Preheat oven to 350℉. Line a muffin pan with reusable silicone liners, paper liners lightly coated in cooking spray, or use a silicone muffin pan. Set aside.
  • In a large bowl, whisk together eggs. Add shredded zucchini, cheese, onions, salt, basil, and pepper. Stir to combine. Divide egg mixture between 10 muffin tins, filling ⅔ of the way full.
  • Bake for about 16-20 minutes, or until muffins are set in the center. Remove from oven and allow to cool in the pan for a few minutes (until pan can easily be handled) before carefully removing.

Recommended Equipment

  • Silicone 12 Cup Muffin Pan
  • Reusable Silicone Muffin Liners, Set of 12
  • Wilton Non-Stick 12-Cup Muffin and Cupcake Pan
  • OXO 11-Inch Balloon Whisk

Video

Notes

  • Squeeze the liquid out: Make sure extra liquid is squeezed out of your shredded zucchini before adding to egg mixture - this prevents muffins from turning out watery. 
  • Cool before freezing: If refrigerating or freezing, allow to cool to room temperature before storing. This helps prevents muffins from getting watery while reheating. 
  • Storage: Egg muffins will keep for 3-4 days in the refrigerator, or up to 3 months in the freezer. 
  • Reheating: in the microwave in 20 second increments until warm, or in the toaster oven at 350 degrees Fahrenheit for 8-10 minutes.

Nutrition Estimate

Serving: 1muffin | Calories: 87kcal | Carbohydrates: 1g | Protein: 6g | Fat: 6g | Saturated Fat: 3g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 2g | Trans Fat: 0.01g | Cholesterol: 110mg | Sodium: 229mg | Potassium: 85mg | Fiber: 0.2g | Sugar: 1g | Vitamin A: 305IU | Vitamin C: 3mg | Calcium: 99mg | Iron: 1mg
Course: Breakfast, Main Course
Cuisine: American

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    5 from 3 votes (2 ratings without comment)

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  1. Teresa

    July 22, 2024 at 9:59 pm

    5 stars
    Super easy and delicious! Grandkids love them.

    Reply

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